Region/selection model(number of codons) | d.f. | -2ΔLnL | Pvalue | % of sites(average dN/dS) | Selected sites |
---|---|---|---|---|---|
Loop1 (269) | Â | Â | Â | Â | Â |
M7 versus M8 | 2 | 10.04 | 0.0066 | 1.3% (1.37) | 182 (0.99, n.s.) |
M8a versus M8 | 1 | 4.87 | 0.027 | - | - |
Loop 2 N-term (251) | Â | Â | Â | Â | Â |
M7 versus M8 | 2 | 25.86 | <0.0001 | 1.3% (1.78) | 416 (0.99, 0.99),417 (0.98, 1), 421 (0.91, 0.99) |
M8a versus M8 | 1 | 10.98 | 0.0009 | - | Â |
Loop 2 C-term (81) | Â | Â | Â | Â | Â |
M7 versus M8 | 2 | <0.01 | >0.99 | - | - |
M8a versus M8 | 1 | 1.96 | 0.16 | Â | - |
SSD (164) | Â | Â | Â | Â | Â |
M7 versus M8 | 2 | 5.70 | 0.058 | - | - |
M8a versus M8 | 1 | 0.02 | >0.88 | - | - |
Loop 3 (248) | Â | Â | Â | Â | Â |
M7 versus M8 | 2 | 0.004 | >0.99 | - | - |
M8a versus M8 | 1 | 1.52 | 0.21 | - | - |