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Table 1 Oligonucleotide sequences used in the dual reporter gene assay, corresponding to the Y122X, G542X, R1162X and W1292X mutations and the TQ in frame control. Readthrough level before and after incubation with 600 μg/ml gentamicin.

From: In vitroprediction of stop-codon suppression by intravenous gentamicin in patients with cystic fibrosis: a pilot study

  

Readthrough level (%)*

Mutation

Oligonucleotides**

0

600 μg/ml gentamicin

Y122X

w 5' CGCTCTATCGCGTAACTAGGCATAGGC 3';

c 5' GCCTATGCCTAGTTACGCGATAGAGCG 3'

0.52

1.6

W1282X

w 5’ AATATAGTTCTTTGAGAAGGTGGAATC 3’

c 5’ GATTCCACCTTCTCAAAGAACTATATT 3’

0.115

0.35

R1162X

w 5' CGATCTGTGAGCTGAGTCTTTAAGTTC 3';

c 5' GAACTTAAAGACTCAGCTCACAGATCG 3'

0.023

0.22

G542X

w 5' ACTTTGCAACAGTGAAGGAAAGCCTTT 3';

c 5' AAAGGCTTCCTTCACTGTTGCAAAGT 3'

0.017

0.26

TQ: in frame control

w 5' GCAGGAACACAACAGCAATTACAG 3'

c 5' CTGTAATTGCTGTTGTGTTCCTGC 3'

100

100

  1. *At least five independent experiments were performed with each construct and showed less than 20% variation.
  2. ** w and c refer to the sense and antisense strands respectively.