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Table 10 Linkage between stringent-filter SNPs and adjacent SNPs.

From: Evidence for somatic gene conversion and deletion in bipolar disorder, Crohn's disease, coronary artery disease, hypertension, rheumatoid arthritis, type-1 diabetes, and type-2 diabetes

Stringent test SNP Disease Adjacent SNP P Comments
rs9551988 HT rs3858741 3.2 × 10-12 1.1 kb away, within same duplicon
  BD rs3858741 8.9 × 10-8 (No linkage for CAD.)
rs9378249 BD rs2596477 3.7 × 10-7 22 bp away, within same duplicon
  HT rs2596477 6.0 × 10-4  
rs841245 HT rs12229182 2.5 × 10-6 12 kb away, within same duplicon
   rs841636 1.7 × 10-5 12 kb away, within same duplicon
     (No linkage at intervening SNP rs10842853)
SNP_A-1948953 BD rs9893203 5.4 × 10-4 8.6 kb away
  HT rs9893203 6.8 × 10-4  
rs11010908 T2D rs17561365 1.2 × 10-3 3.2 kb away, within same duplicon
  1. The P value corresponds to a one-sided chi-squared test for an increased no-call rate. P values for excluded SNPs were all above 2 × 10-3.