Evidence for somatic gene conversion and deletion in bipolar disorder, Crohn's disease, coronary artery disease, hypertension, rheumatoid arthritis, type-1 diabetes, and type-2 diabetes

Table 10 Linkage between stringent-filter SNPs and adjacent SNPs.

Stringent test SNP	Disease	Adjacent SNP	P	Comments
rs9551988	HT	rs3858741	3.2 × 10^-12	1.1 kb away, within same duplicon
	BD	rs3858741	8.9 × 10^-8	(No linkage for CAD.)
rs9378249	BD	rs2596477	3.7 × 10^-7	22 bp away, within same duplicon
	HT	rs2596477	6.0 × 10^-4
rs841245	HT	rs12229182	2.5 × 10^-6	12 kb away, within same duplicon
		rs841636	1.7 × 10^-5	12 kb away, within same duplicon
				(No linkage at intervening SNP rs10842853)
SNP_A-1948953	BD	rs9893203	5.4 × 10^-4	8.6 kb away
	HT	rs9893203	6.8 × 10^-4
rs11010908	T2D	rs17561365	1.2 × 10^-3	3.2 kb away, within same duplicon

The P value corresponds to a one-sided chi-squared test for an increased no-call rate. P values for excluded SNPs were all above 2 × 10^-3.

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