Table 2 SNPs identified for various cohorts using the stringent filter (Part 1).
Cohort(s) | SNP/identity (degeneracy) | Chr: Pos. (hg17) and orientation | Duplicon length | Characterized genes and pseudogenes in duplicons | |
|---|---|---|---|---|---|
CD | rs4471699 | 16: | 30.2 M→ | 147 kb | SULT1A3, GIYD2, BOLA2, IMAA, CORO1A |
99.6% | 16: | 29.4 M→ | 146 kb | SULT1A3, GIYD2, BOLA2, IMAA, MLAS | |
98.1% | 16: | 21.8 M→ | 41 kb | [UQCRC2] | |
98.0% | 16: | 22.3 M← | 42 kb | [NPIPL3] | |
98.0% | 16: | 21.3 M→ | 42 kb | IMAA, [NPIPL3] | |
97.1% | 16: | 18.8 M→ | 75 kb | SMG1 | |
RA | rs669980 | 9: | 0.2 M→ | 193 kb | CBWD1, FOXD4, FAM138A, WASH1, [DOCK8] |
98.9% (F) | 2: | 114 M← | 189 kb | CBWD2, FOX4DL1, FAM138B, WASH2P, [RABL2A] | |
CAD, T2D | rs10502407 | 18: | 10.6 M→ | 52 kb | - |
97.9% | 18: | 12.2 M← | 64 kb | [CIDEA] | |
CAD | rs12134625 | 1: | 78 M→ | 931 | - |
97.0% | 1: | 24 M← | 932 | FUSIP1 | |
BD, CAD | rs9551988 | 13: | 19.2 M→ | 2.6 kb | PSPC1 |
HT | 96.2% (F) | 13: | 18.7 M→ | 2.8 kb | [TUBA3C] |
HT | rs935019 | 2: | 127,162 K→ | 3.6 kb | GYPC |
95.3% (F) | 2: | 127,166 K→ | 3.5 kb | GYPC | |
HT | rs12227938 | 12: | 37 M→ | 154 kb | ALG10B |
95.3% (P) | 12: | 34 M→ | 127 kb | ALG10 | |
T2D | SNP_A-1797773 | 16: | 45 M→ | 14 kb | VPS35, [ORC6L] |
94.8% (F) | 16: | 34 M← | 16 kb | - | |
T1D | rs12381130 | 16: | 5 M→ | 88 kb | ALG1, FAM86A |
94.7% | 3: | 127 M← | 76 kb | ALG1L | |
94.6% | 11: | 67 M→ | 79 kb | - | |
94.6% | 11: | 71 M← | 40 kb | FAM86C, [DEFB108B] | |
94.5% | 11: | 3 M→ | 91 kb | [ZNF195] | |
94.3% | 3: | 76 M→ | 44 kb | [FAM86D] | |
94.0% | 4: | 9 M← | 120 kb | - | |
93.9% | 3: | 131 M→ | 44 kb | - | |
93.9% | 4: | 4 M→ | 53 kb | - | |
93.7% | 12: | 8 M→ | 53 kb | [FAM90A1] | |
93.6% | 8: | 12 M→ | 41 kb | [FAM86B1] | |
93.5% | 8: | 8 M← | 63 kb | - | |