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Table 4 SNPs identified in the MHC region for T1D using the stringent filter.

From: Evidence for somatic gene conversion and deletion in bipolar disorder, Crohn's disease, coronary artery disease, hypertension, rheumatoid arthritis, type-1 diabetes, and type-2 diabetes

Cohort(s) SNP/identity
(degeneracy)
Chr: Pos. (hg17)
and orientation
Duplicon
length
Characterized genes and
pseudogenes in duplicons
T1D rs9378249 6: 31.4 M→ 27 kb HLA-B, DHFRP2
  92.9% (F) 6: 31.3 M→ 35 kb HLA-C
T1D rs9257223 6: 29 M→ 16 kb -
  92.5% 11: 50 M→ 16 kb -
T1D rs389600 6: 30 M→ 4 kb HLA-K
  87.5% 6: 30 M← 4 kb HLA-A
  87.5% 6: 30 M← 4 kb HLA-H
  86.2% 6: 30 M← 4 kb HLA-J
  85.8% 6: 30 M← 3.5 kb HLA-G