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Table 8 Additional SNPs identified using the no-call-only filter.

From: Evidence for somatic gene conversion and deletion in bipolar disorder, Crohn's disease, coronary artery disease, hypertension, rheumatoid arthritis, type-1 diabetes, and type-2 diabetes

SNP Disease(s) Characterized genes in duplicons
rs10238378 BD -
rs10485575 BD SNX5, ANO4
rs10768666 RA HCCA2, KRTAP5-8, KRTAP5-3, [KRTAP5-2], [KRTAP5-1], [KRTAP5-5], [KRTAP5-9], [KRTAP5-10],
rs10811497 BD IFNA4, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, [IFNW1]
rs10896468 BD, CD, T2D OR8U8, OR5M8, [OR5M3], [OR5M9]
rs11228904 BD, HT, T1D TRIM48, TRIM53
rs11583656 HT MYPT2, [UBE2T]
rs1191684 BD [PAX8]
rs12428824 BD ENPP3, CTAGE4, CTAGE6, [OR2A7], [OR2A20P], [OR2A4]
rs1421867 T1D -
rs1708080l BD, HT PARP4, TPTE2
rs17310770 T2D ROPN1, ROPN1B, CCDC14
rs17423694 HT [NBPF11]
rs17636964 BD, RA, T2D IPMK
rs1809667 T1D HCCA2, KRTAP5-2, KRTAP5-8, KRTAP5-3, KRTAP5-10, KRTAP5-11, KRTAP5-7, [KRTAP5-1], [DUSP8], [KRTAP5-5], [KRTAP5-9]
rs1819829 HT CES7, [CES1]
rs1820450 RA GPC5, [GOLGA8B]
rs1868584 BD ROCK2, CGGBP1, [ZNF654]
rs193017l T1D PCDH15
rs2039945 T2D -
rs2804672 HT HSD17B7, HSD17B7P2, CDC10L
rs3864439 BD DPY19L2, DPY19L2P1, DPY19L2P4, [DPY19L1], [STEAP1]
rs4236384 RA SLC29A4, TNRC18
rs4318932 T2D TYW1, TYW1B, [STAG3L4]
rs4471699 BD, T2D SULT1A3, GIYD2, BOLA2, IMAA, CORO1A, MLAS, SMG1, [UQCRC2], [NPIPL3]
rs4532803 CAD ELA3A, ELA3B, [HSPC157]
rs4545817 HT ALG1, FAM86A, [COL6A4P2]
rs584630 BD ZNF33A, ZNF33B, ZNF37A, ZNF37B, [ZNF25]
rs649483l RA FMN1
rs6510085 RA ZNF419, ZNF773, [ZNF772], [ZNF549]
rs651263l CAD -
rs731999l BD, CAD, HT, T1D, T2D CENPI
rs8182488 T1D ZNF765, ZNF761, [ZNF813]
rs9948005 BD FAM38B
rs9976299 RA ITGB2
SNP_A-1817967 CAD, CD -
SNP_A-1858955 CD, BD GUSBL1, GUSBL2, SMA4, GUSBP1, [RGL4]
  1. Genes in square brackets are outside the duplicons, but a duplicon is at most 30 kb upstream of the gene.