Table 9 SNPs with anomalous cluster plots.
Filter | SNP | Disease(s) | Cluster plot feature |
|---|---|---|---|
Stringent, relaxed | rs10502407 | CAD, T2D, BD | 58C disparity |
Stringent | rs11010908 | T2D | 58C disparity |
Stringent | rs12070036 | BD | 58C disparity |
Stringent | rs12381130 | T1D | 58C disparity |
Stringent | rs295470 | CAD | 58C disparity |
Stringent, relaxed | SNP_A-1797773 | T2D, BD, CD | 58C disparity |
Stringent (MHC in T1D) | rs9257223 | T1D | 58C disparity |
Relaxed | rs11028186 | RA | 58C disparity |
Relaxed | rs12256867 | T2D | 58C disparity |
Relaxed | rs1404223 | CAD | 58C disparity |
Relaxed | rs17230081 | T2D | 58C disparity |
Relaxed | rs1842055 | CAD | 58C disparity |
Relaxed | rs330201 | CAD | 58C disparity |
Relaxed, no-call | rs4318932 | T2D | NBS/CAD/RA disparity |
Relaxed | rs4473816 | RA | 58C disparity |
Relaxed | rs7259082 | CAD | 58C disparity |
Relaxed | rs9665670 | BD, CAD | 58C disparity |
Relaxed, no-call | SNP_A-1817967 | CD | 58C disparity |
No-call | rs10238378 | BD | 58C disparity |
No-call | rs10485575 | BD | 58C disparity |
No-call | rs10811497 | BD | 58C disparity |
No-call | rs12428824 | BD | 58C disparity |
No-call | rs1421867 | T1D | more than 3 clusters |
No-call | rs1819829 | HT | NBS/CAD/RA disparity |
No-call | rs2039945 | T2D | 58C disparity |
No-call | rs2804672 | HT | NBS/CAD/RA disparity |
No-call | rs6512631 | CAD | 58C disparity |