TY - JOUR AU - Pialoux, G. AU - Gauzere, B. A. AU - Jaureguiberry, S. AU - Strobel, M. PY - 2007 DA - 2007// TI - Chikungunya, an epidemic arbovirosis JO - Lancet Infect Dis VL - 7 UR - https://doi.org/10.1016/S1473-3099(07)70107-X DO - 10.1016/S1473-3099(07)70107-X ID - Pialoux2007 ER - TY - BOOK PY - 2011 DA - 2011// TI - Preparedness and response for Chikungunya virus: introduction in the Americas PB - PAHO/CDC CY - Washington, DC ID - ref2 ER - TY - JOUR AU - Weaver, S. C. PY - 2014 DA - 2014// TI - Arrival of Chikungunya virus in the new world: prospects for spread and impact on public health JO - PLoS Negl Trop Dis VL - 8 UR - https://doi.org/10.1371/journal.pntd.0002921 DO - 10.1371/journal.pntd.0002921 ID - Weaver2014 ER - TY - JOUR AU - Tsetsarkin, K. A. AU - Chen, R. AU - Yun, R. AU - Rossi, S. L. AU - Plante, K. S. AU - Guerbois, M. PY - 2014 DA - 2014// TI - Multi-peaked adaptive landscape for Chikungunya virus evolution predicts continued fitness optimization in Aedes albopictus mosquitoes JO - Nat Commun VL - 5 UR - https://doi.org/10.1038/ncomms5084 DO - 10.1038/ncomms5084 ID - Tsetsarkin2014 ER - TY - JOUR AU - Soumahoro, M. K. AU - Fontenille, D. AU - Turbelin, C. AU - Pelat, C. AU - Boyd, A. AU - Flahault, A. PY - 2010 DA - 2010// TI - Imported Chikungunya virus infection JO - Emerg Infect Dis VL - 16 UR - https://doi.org/10.3201/eid1601.080776 DO - 10.3201/eid1601.080776 ID - Soumahoro2010 ER - TY - JOUR AU - Leparc-Goffart, I. AU - Nougairede, A. AU - Cassadou, S. AU - Prat, C. AU - Lamballerie, X. PY - 2014 DA - 2014// TI - Chikungunya in the Americas JO - Lancet VL - 383 UR - https://doi.org/10.1016/S0140-6736(14)60185-9 DO - 10.1016/S0140-6736(14)60185-9 ID - Leparc-Goffart2014 ER - TY - STD TI - Pan American Health Organization. Chikungunya. Washington, DC: PAHO. http://www.paho.org/hq/index.php?option=com_topics&view=article&id=343&Itemid=40931. UR - http://www.paho.org/hq/index.php?option=com_topics&view=article&id=343&Itemid=40931 ID - ref7 ER - TY - STD TI - Brazilian Health Portal. Boletim Epidemiológico. http://portalsaude.saude.gov.br/. 2015. UR - http://portalsaude.saude.gov.br/ ID - ref8 ER - TY - JOUR AU - Roth, A. AU - Mercier, A. AU - Lepers, C. AU - Hoy, D. AU - Duituturaga, S. AU - Benyon, E. PY - 2014 DA - 2014// TI - Concurrent outbreaks of dengue, Chikungunya and Zika virus infections – an unprecedented epidemic wave of mosquito-borne viruses in the Pacific 2012–2014 JO - Euro Surveill VL - 19 UR - https://doi.org/10.2807/1560-7917.ES2014.19.41.20929 DO - 10.2807/1560-7917.ES2014.19.41.20929 ID - Roth2014 ER - TY - JOUR AU - Villabona-Arenas, C. J. AU - Oliveira, J. L. AU - Capra Cde, S. AU - Balarini, K. AU - Loureiro, M. AU - Fonseca, C. R. PY - 2014 DA - 2014// TI - Detection of four dengue serotypes suggests rise in hyperendemicity in urban centers of Brazil JO - PLoS Negl Trop Dis VL - 8 UR - https://doi.org/10.1371/journal.pntd.0002620 DO - 10.1371/journal.pntd.0002620 ID - Villabona-Arenas2014 ER - TY - JOUR AU - Rothberg, J. M. AU - Hinz, W. AU - Rearick, T. M. AU - Schultz, J. AU - Mileski, W. AU - Davey, M. PY - 2011 DA - 2011// TI - An integrated semiconductor device enabling non-optical genome sequencing JO - Nature VL - 475 UR - https://doi.org/10.1038/nature10242 DO - 10.1038/nature10242 ID - Rothberg2011 ER - TY - JOUR AU - Chevreux, B. AU - Pfisterer, T. AU - Drescher, B. AU - Driesel, A. J. AU - Muller, W. E. G. AU - Wetter, T. PY - 2004 DA - 2004// TI - Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.1917404 DO - 10.1101/gr.1917404 ID - Chevreux2004 ER - TY - JOUR AU - Benson, D. A. AU - Clark, K. AU - Karsch-Mizrachi, I. AU - Lipman, D. J. AU - Ostell, J. AU - Sayers, E. W. PY - 2014 DA - 2014// TI - GenBank JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1030 DO - 10.1093/nar/gkt1030 ID - Benson2014 ER - TY - JOUR AU - Katoh, K. AU - Kuma, K. AU - Toh, H. AU - Miyata, T. PY - 2005 DA - 2005// TI - MAFFT version 5: improvement in accuracy of multiple sequence alignment JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki198 DO - 10.1093/nar/gki198 ID - Katoh2005 ER - TY - JOUR AU - Guindon, S. AU - Dufayard, J. F. AU - Lefort, V. AU - Anisimova, M. AU - Hordijk, W. AU - Gascuel, O. PY - 2010 DA - 2010// TI - New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 JO - Syst Biol VL - 59 UR - https://doi.org/10.1093/sysbio/syq010 DO - 10.1093/sysbio/syq010 ID - Guindon2010 ER - TY - JOUR AU - Drummond, A. J. AU - Suchard, M. A. AU - Xie, D. AU - Rambaut, A. PY - 2012 DA - 2012// TI - Bayesian phylogenetics with BEAUti and the BEAST 1.7 JO - Mol Biol Evol VL - 29 UR - https://doi.org/10.1093/molbev/mss075 DO - 10.1093/molbev/mss075 ID - Drummond2012 ER - TY - JOUR AU - Darriba, D. AU - Taboada, G. L. AU - Doallo, R. AU - Posada, D. PY - 2012 DA - 2012// TI - jModelTest 2: more models, new heuristics and parallel computing JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.2109 DO - 10.1038/nmeth.2109 ID - Darriba2012 ER - TY - JOUR AU - Drummond, A. J. AU - Ho, S. Y. AU - Phillips, M. J. AU - Rambaut, A. PY - 2006 DA - 2006// TI - Relaxed phylogenetics and dating with confidence JO - PLoS Biol VL - 4 UR - https://doi.org/10.1371/journal.pbio.0040088 DO - 10.1371/journal.pbio.0040088 ID - Drummond2006 ER - TY - JOUR AU - Gill, M. S. AU - Lemey, P. AU - Faria, N. R. AU - Rambaut, A. AU - Shapiro, B. AU - Suchard, M. A. PY - 2013 DA - 2013// TI - Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mss265 DO - 10.1093/molbev/mss265 ID - Gill2013 ER - TY - JOUR AU - Drummond, A. J. AU - Rambaut, A. AU - Shapiro, B. AU - Pybus, O. G. PY - 2005 DA - 2005// TI - Bayesian coalescent inference of past population dynamics from molecular sequences JO - Mol Biol Evol VL - 22 UR - https://doi.org/10.1093/molbev/msi103 DO - 10.1093/molbev/msi103 ID - Drummond2005 ER - TY - JOUR AU - Honorio, N. A. AU - Silva Wda, C. AU - Leite, P. J. AU - Goncalves, J. M. AU - Lounibos, L. P. AU - Lourenco-de-Oliveira, R. PY - 2003 DA - 2003// TI - Dispersal of Aedes aegypti and Aedes albopictus (Diptera: Culicidae) in an urban endemic dengue area in the State of Rio de Janeiro, Brazil JO - Mem Inst Oswaldo Cruz VL - 98 UR - https://doi.org/10.1590/S0074-02762003000200005 DO - 10.1590/S0074-02762003000200005 ID - Honorio2003 ER - TY - JOUR AU - Simini, F. AU - Maritan, A. AU - Neda, Z. PY - 2013 DA - 2013// TI - Human mobility in a continuum approach JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0060069 DO - 10.1371/journal.pone.0060069 ID - Simini2013 ER - TY - JOUR AU - Deville, P. AU - Linard, C. AU - Martin, S. AU - Gilbert, M. AU - Stevens, F. R. AU - Gaughan, A. E. PY - 2014 DA - 2014// TI - Dynamic population mapping using mobile phone data JO - PNAS VL - 111 UR - https://doi.org/10.1073/pnas.1408439111 DO - 10.1073/pnas.1408439111 ID - Deville2014 ER - TY - STD TI - Socioeconomic Data and Applications Center (sedac). Gridded population of the world, version 3 (GPWv3) and the Global Rural–urban Mapping Project (GRUM); 2010. http://sedac.ciesin.columbia.edu/data/collection/gpw-v3. UR - http://sedac.ciesin.columbia.edu/data/collection/gpw-v3 ID - ref24 ER - TY - STD TI - Global Administrative Areas. http://www.gadm.org. UR - http://www.gadm.org ID - ref25 ER - TY - JOUR AU - Nelder, J. A. AU - Mead, R. PY - 1965 DA - 1965// TI - A simplex method for function minimization JO - Comput J VL - 7 UR - https://doi.org/10.1093/comjnl/7.4.308 DO - 10.1093/comjnl/7.4.308 ID - Nelder1965 ER - TY - BOOK AU - Team, R. C. PY - 2014 DA - 2014// TI - R: a language and environment for computing PB - R Foundation for Statistical Computing CY - Vienna ID - Team2014 ER - TY - JOUR AU - Carvalho, R. G. AU - Lourenco-de-Oliveira, R. AU - Braga, I. A. PY - 2014 DA - 2014// TI - Updating the geographical distribution and frequency of Aedes albopictus in Brazil with remarks regarding its range in the Americas JO - Mem Inst Oswaldo Cruz VL - 109 UR - https://doi.org/10.1590/0074-0276140304 DO - 10.1590/0074-0276140304 ID - Carvalho2014 ER - TY - STD TI - Saúde MD: Dengue: Notificações registradas no Sistema de Informação de Agravos de Notificação – SINAN, Brazil. http://dtr2004.saude.gov.br/sinanweb. UR - http://dtr2004.saude.gov.br/sinanweb ID - ref29 ER - TY - JOUR AU - Tsetsarkin, K. A. AU - Weaver, S. C. PY - 2011 DA - 2011// TI - Sequential adaptive mutations enhance efficient vector switching by Chikungunya virus and its epidemic emergence JO - PLoS Pathog VL - 7 UR - https://doi.org/10.1371/journal.ppat.1002412 DO - 10.1371/journal.ppat.1002412 ID - Tsetsarkin2011 ER - TY - JOUR AU - Volk, S. M. AU - Chen, R. AU - Tsetsarkin, K. A. AU - Adams, A. P. AU - Garcia, T. I. AU - Sall, A. A. AU - Nasar, F. AU - Schuh, A. J. AU - Holmes, E. C. AU - Higgs, S. AU - Maharaj, P. D. AU - Brault, A. C. AU - Weaver, S. C. PY - 2010 DA - 2010// TI - Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates JO - J Virol VL - 84 UR - https://doi.org/10.1128/JVI.01603-09 DO - 10.1128/JVI.01603-09 ID - Volk2010 ER - TY - JOUR AU - Filipe, A. F. AU - Pinto, M. R. PY - 1973 DA - 1973// TI - Arbovirus studies in Luanda, Angola. 2. Virological and serological studies during an outbreak of dengue-like disease caused by the Chikungunya virus JO - Bull World Health Organ VL - 49 ID - Filipe1973 ER - TY - STD TI - IBGE. Instituto Brasileiro de Geografia e Estatistica (SIDRA) Available at http://www.sidra.ibge.gov.br/bda/tabela/listabl.asp?c=3173&z=t&o=3. Accessed 07 Nov 2014. UR - http://www.sidra.ibge.gov.br/bda/tabela/listabl.asp?c=3173&z=t&o=3 ID - ref33 ER - TY - JOUR AU - Vasconcelos, P. F. C. AU - Travassos da Rosa, A. P. A. AU - Degallier, N. AU - Travassos da Rosa, J. F. S. AU - Pinheiro, F. R. PY - 1992 DA - 1992// TI - Clinical and ecoepidemiological situation of human arboviruses in Brazilian Amazonia JO - J Braz Assoc Adv Sci VL - 43 ID - Vasconcelos1992 ER - TY - JOUR AU - Codeco, C. T. AU - Lima, A. W. AU - Araujo, S. C. AU - Lima, J. B. AU - Maciel-de-Freitas, R. AU - Honorio, N. A. AU - Galardo, A. K. AU - Braga, I. A. AU - Coelho, G. E. AU - Valle, D. PY - 2015 DA - 2015// TI - Surveillance of Aedes aegypti: Comparison of House Index with Four Alternative Traps JO - PLoS Negl Trop Dis VL - 9 UR - https://doi.org/10.1371/journal.pntd.0003475 DO - 10.1371/journal.pntd.0003475 ID - Codeco2015 ER - TY - JOUR AU - Staples, J. E. AU - Fischer, M. PY - 2014 DA - 2014// TI - Chikungunya virus in the Americas–what a vectorborne pathogen can do JO - N Engl J Med VL - 371 UR - https://doi.org/10.1056/NEJMp1407698 DO - 10.1056/NEJMp1407698 ID - Staples2014 ER - TY - JOUR AU - Powers, A. M. AU - Brault, A. C. AU - Shirako, Y. PY - 2001 DA - 2001// TI - Evolutionary relationships and systematics of the alphaviruses JO - J Virol VL - 75 UR - https://doi.org/10.1128/JVI.75.21.10118-10131.2001 DO - 10.1128/JVI.75.21.10118-10131.2001 ID - Powers2001 ER - TY - STD TI - Hassing RJ, Leparc-Goffart I, Tolou H, van Doornum G, van Genderen PJ. Cross-reactivity of antibodies to viruses belonging to the Semliki forest serocomplex. Euro surveillance 2010; 15. ID - ref38 ER - TY - JOUR AU - Sam, I. C. AU - Chan, Y. F. AU - Chan, S. Y. AU - Loong, S. K. AU - Chin, H. K. AU - Hooi, P. S. AU - Ganeswrie, R. AU - Abubakar, S. PY - 2009 DA - 2009// TI - Chikungunya virus of Asian and Central/East African genotypes in Malaysia JO - J Clin Virol VL - 46 UR - https://doi.org/10.1016/j.jcv.2009.07.016 DO - 10.1016/j.jcv.2009.07.016 ID - Sam2009 ER - TY - JOUR AU - Vega-Rúa, A. AU - Zouache, K. AU - Girod, R. AU - Failloux, A. -. B. AU - Lourenço-de-Oliveira, R. PY - 2014 DA - 2014// TI - High level of vector competence of Aedes aegypti and Aedes albopictus from ten American countries as a crucial factor in the spread of Chikungunya virus JO - J Virol VL - 88 UR - https://doi.org/10.1128/JVI.00370-14 DO - 10.1128/JVI.00370-14 ID - Vega-Rúa2014 ER - TY - JOUR AU - Coelho, G. E. PY - 2012 DA - 2012// TI - Challenges in the control of Aedes aegypti JO - Rev Inst Med Trop Sao Paulo VL - 54 UR - https://doi.org/10.1590/S0036-46652012000700006 DO - 10.1590/S0036-46652012000700006 ID - Coelho2012 ER - TY - JOUR AU - Wesolowski, A. AU - Eagle, N. AU - Tatem, A. J. AU - Smith, D. L. AU - Noor, A. M. AU - Snow, R. W. AU - Buckee, C. O. PY - 2012 DA - 2012// TI - Quantifying the impact of human mobility on malaria JO - Science VL - 338 UR - https://doi.org/10.1126/science.1223467 DO - 10.1126/science.1223467 ID - Wesolowski2012 ER - TY - JOUR AU - Apandi, Y. AU - Nazni, W. A. AU - Noor Azleen, Z. A. AU - Vythilingam, I. AU - Noorazian, M. Y. AU - Azahari, A. H. AU - Zainah, S. AU - Lee, H. L. PY - 2009 DA - 2009// TI - The first isolation of Chikungunya virus from non-human primates in Malaysia JO - J Gen Molec Virol VL - 1 ID - Apandi2009 ER - TY - JOUR AU - Taylor, R. M. AU - FdC, J. PY - 1946 DA - 1946// TI - An epidemiological study of jungle yellow fever in an endemic area in Brazil; epidemiology of human infections; investigation of vertebrate hosts and arthropod vectors JO - AmJTrop Med Hyg VL - 26 ID - Taylor1946 ER -