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Table 2 List of pathogens per testing panel

From: The East African Community (EAC) mobile laboratory networks in Kenya, Burundi, Tanzania, Rwanda, Uganda, and South Sudan—from project implementation to outbreak response against Dengue, Ebola, COVID-19, and epidemic-prone diseases

Viral (Haemorrhagic) fevers

Gastro-Intestinal Panel

Respiratory Panels

ELISA

Crimean-Congo haemorrhagic fever virus

Norovirus GI

SARS-CoV-2

Crimean-Congo haemorrhagic fever virus

Chikungunya virus

Norovirus GII

Influenza A virus (Flu A)

Dengue virus

Dengue virus

Rotavirus

Influenza B virus (Flu B)

Ebola virus

Ebola virus

Marburg virus

Adenovirus

Respiratory syncytial virus A (RSV A)

Zika virus

Rift Valley fever virus

Astrovirus

Respiratory syncytial virus B (RSV B)

Lassa fever virus

Zika virus

Sapovirus

Flu A-H1

 

West Nile virus (WNV1/WNV2)

Campylobacter spp.

Flu A-H1pdm09

 

MERS-CoV

Clostridium difficile toxin B

Flu A-H3

 

Lassa fever virus

Salmonella spp.

Adenovirus (AdV)

 

Monkeypox virus

Shigella spp. / EIEC

Enterovirus (HEV)

 

Yellow fever virus

Vibrio spp.

Parainfluenza virus 1 (PIV 1)

 

Yersinia enterocolitica

Parainfluenza virus 2 (PIV 2)

 

Aeromonas spp.

Parainfluenza virus 3 (PIV 3)

 

Clostridium difficile hypervirulent

Parainfluenza virus 4 (PIV 4)

 

E. coli O157

Metapneumovirus (MPV)

 

STEC (stx1/2)

Bocavirus (HBoV)

 

EPEC (eaeA)

Rhinovirus (HRV)

 

ETEC (It/st)

Coronavirus NL63 (CoV NL63)

 

EAEC (aggR)

Coronavirus 229E (CoV 229E)

 

Giardia lamblia

Coronavirus OC43 (CoV OC43)

 

Entamoeba histolytica

Mycoplasma pneumoniae

 

Cryptosporidium spp.

Chlamydophila pneumoniae

 

Blastocystis hominis

Legionella pneumophila

 

Dientamoeba fragilis

Haemophilus influenzae

 

Cyclospora cayetanensis

Streptococcus pneumoniae

 
 

Bordetella pertussis

 
 

Bordetella parapertussis