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Table 1 Shared risk loci between FTD and psychiatric disorders

From: Shared genetic links between frontotemporal dementia and psychiatric disorders

Index SNP

Genomic position

Closest gene

FDR value

Associated phenotype

rs10863728

1:209056568

LINC01717; LINC01774

5.97E-03

ASD

rs10889502

1:65379982

JAK1

4.64E-03

AUD

rs9812061

3:85013262

CADM2

7.38E-03

AUD

rs3132451

6:31582025

AIF1

6.99E-03

SCZ

rs3130291

6:32175331

NOTCH4

5.38E-03

SCZ

rs3117097

6:32358689

HCG23;TSBP1-AS1

3.43E-05

PTSD, SCZ

rs3129953

6:32361821

BTNL2

1.25E-04

PTSD, SCZ

rs7746751

6:32430867

HLA-DRA;HLA-DRB5

9.91E-06

SCZ

rs60045856

6:32799845

TAP2

9.82E-03

SCZ

rs215034

16:15996556

FOPNL;ABCC1

3.10E-03

AUD

rs34104358

17:43508616

ARHGAP27

1.65E-03

ASD,AUD

rs56314414

17:43536970

PLEKHM1

1.52E-03

ASD,AUD

rs62057112

17:43897202

CRHR1; LINC02210-CRHR1

8.50E-04

ASD,AUD

rs62054815

17:43923266

SPPL2C

9.27E-04

ASD,AUD

rs34097347

17:43949448

MAPT-AS1

8.66E-04

ASD,AUD,SCZ

rs62063281

17:44038785

MAPT

8.61E-04

ASD,AUD,SCZ

rs62063675

17:44126575

KANSL1

1.10E-03

ASD,AUD,SCZ

rs199531

17:44830414

NSF

2.18E-03

ASD,AUD,SCZ

rs199526

17:44847707

WNT3

1.40E-03

ASD,AUD

rs1406857

20:37362432

SLC32A1;ACTR5

4.21E-03

SCZ

  1. SNP single nucleotide polymorphism, FDR false discovery rate, SCZ schizophrenia, ASD autism spectrum disorder, AUD alcohol use disorder, PTSD post-traumatic stress disorder. Index SNP was the one with lowest FDR value. Index SNP was the SNP with the lowest FDR value in each locus. The genomic position was on GRCh37. Closest gene was annotated from ANNOVAR