Table 1 Gene set enrichment analysis
Query* | Adjusted p-value** | Term size*** | Intersection size**** | Term ID | Term name | Intersection with WikiPathway |
|---|---|---|---|---|---|---|
CBT_ORA | 0.014 | 49 | 5 | WP:WP5039 | SARS-CoV-2 innate immunity evasion and cell-specific immune response | CXCL1,PPBP,PF4,CXCR2,CXCL5 |
CBT_ORA | 0.037 | 91 | 8 | WP:WP111 | Electron transport chain (OXPHOS system in mitochondria) | MT-ND3,ATP5F1E,MT-ND1,MT-ATP6,MT-CO2,MT-CO3,MT-ND4,MT-CO1 |
CTG_ORA | <0.001 | 46 | 10 | WP:WP286 | IL-3 signaling pathway | FOS,CSF2RB,GAB2,HCK,LYN,MAPK3,RAF1,STAT3,STAT5B,PIK3CD |
CTG_ORA | 0.001 | 49 | 10 | WP:WP395 | IL-4 signaling pathway | FOS,IRS2,CEBPB,GAB2,NFIL3,MAPK3,STAT6,STAT3,STAT5B,PIK3CD |
CTG_ORA | 0.002 | 26 | 3 | WP:WP4564 | Neural crest cell migration during development | MMP9,EPHB4,FOS |
CTG_ORA | 0.003 | 28 | 3 | WP:WP4565 | Neural crest cell migration in cancer | MMP9,EPHB4,FOS |
CTG_ORA | 0.004 | 29 | 7 | WP:WP3972 | PDGFR-beta pathway | FOS,MAPK3,RAF1,MAP2K4,STAT6,STAT3,STAT5B |
CTG_ORA | 0.006 | 29 | 2 | WP:WP4808 | Endochondral ossification with skeletal dysplasias | MMP9,ALPL |
CTG_ORA | 0.006 | 29 | 2 | WP:WP474 | Endochondral osssification | MMP9,ALPL |
CTG_ORA | 0.006 | 56 | 2 | WP:WP2324 | AGE/RAGE pathway | MMP9,ALPL |
CTG_ORA | 0.008 | 48 | 10 | WP:WP304 | Kit receptor signaling pathway | FOS,GAB2,SH2B2,LYN,MAPK3,RAF1,STAT3,STAT5B,CRK,RPS6KA1 |
CTG_ORA | 0.011 | 37 | 8 | WP:WP127 | IL-5 signaling pathway | FOS,CSF2RB,LYN,MAPK3,RAF1,STAT3,STAT5B,RPS6KA1 |
CTG_ORA | 0.013 | 31 | 7 | WP:WP313 | Signaling of hepatocyte growth factor receptor | FOS,PTEN,MAPK3,RAF1,STAT3,CRK,PXN |
CTG_ORA | 0.015 | 110 | 16 | WP:WP3929 | Chemokine signaling pathway | CXCR2,TIAM2,HCK,NCF1,LYN,ARRB2,GNB2,PREX1,MAPK3,RAF1,STAT3,STAT5B,CRK,WAS,PXN,PIK3CD |
CTG_ORA | 0.031 | 15 | 3 | WP:WP3599 | Transcription factor regulation in adipogenesis | IRS2,CEBPD,CEBPB |
CTG_CR_ORA | 0.002 | 110 | 13 | WP:WP3929 | Chemokine signaling pathway | WAS,PXN,HCK,MAPK3,PREX1,ARRB2,PIK3R5,VAV1,NCF1,CXCL16,PIK3CD,GNB2,GRB2 |
CTG_CR_ORA | 0.006 | 46 | 8 | WP:WP286 | IL-3 signaling pathway | GAB2,CSF2RB,HCK,MAPK3,PTPN6,VAV1,PIK3CD,GRB2 |
CTG_CR_ORA | 0.009 | 48 | 8 | WP:WP304 | Kit receptor signaling pathway | GAB2,MAPK3,PTPN6,RPS6KA1,VAV1,SH2B2,JUNB,GRB2 |
CTG_CR_ORA | 0.016 | 115 | 12 | WP:WP306 | Focal adhesion | ACTN1,PXN,HCK,MAPK3,CCND2,VASP,TLN1,VAV1,ZYX,ITGA5,PIK3CD,GRB2 |
CTG_CR_ORA | 0.032 | 31 | 6 | WP:WP3937 | Microglia pathogen phagocytosis pathway | HCK,PTPN6,VAV1,NCF1,ITGB2,PIK3CD |