Table 8 Additional SNPs identified using the no-call-only filter.
SNP | Disease(s) | Characterized genes in duplicons |
|---|---|---|
rs10238378 | BD | - |
rs10485575 | BD | SNX5, ANO4 |
rs10768666 | RA | HCCA2, KRTAP5-8, KRTAP5-3, [KRTAP5-2], [KRTAP5-1], [KRTAP5-5], [KRTAP5-9], [KRTAP5-10], |
rs10811497 | BD | IFNA4, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, [IFNW1] |
rs10896468 | BD, CD, T2D | OR8U8, OR5M8, [OR5M3], [OR5M9] |
rs11228904 | BD, HT, T1D | TRIM48, TRIM53 |
rs11583656 | HT | MYPT2, [UBE2T] |
rs1191684 | BD | [PAX8] |
rs12428824 | BD | ENPP3, CTAGE4, CTAGE6, [OR2A7], [OR2A20P], [OR2A4] |
rs1421867 | T1D | - |
rs1708080l | BD, HT | PARP4, TPTE2 |
rs17310770 | T2D | ROPN1, ROPN1B, CCDC14 |
rs17423694 | HT | [NBPF11] |
rs17636964 | BD, RA, T2D | IPMK |
rs1809667 | T1D | HCCA2, KRTAP5-2, KRTAP5-8, KRTAP5-3, KRTAP5-10, KRTAP5-11, KRTAP5-7, [KRTAP5-1], [DUSP8], [KRTAP5-5], [KRTAP5-9] |
rs1819829 | HT | CES7, [CES1] |
rs1820450 | RA | GPC5, [GOLGA8B] |
rs1868584 | BD | ROCK2, CGGBP1, [ZNF654] |
rs193017l | T1D | PCDH15 |
rs2039945 | T2D | - |
rs2804672 | HT | HSD17B7, HSD17B7P2, CDC10L |
rs3864439 | BD | DPY19L2, DPY19L2P1, DPY19L2P4, [DPY19L1], [STEAP1] |
rs4236384 | RA | SLC29A4, TNRC18 |
rs4318932 | T2D | TYW1, TYW1B, [STAG3L4] |
rs4471699 | BD, T2D | SULT1A3, GIYD2, BOLA2, IMAA, CORO1A, MLAS, SMG1, [UQCRC2], [NPIPL3] |
rs4532803 | CAD | ELA3A, ELA3B, [HSPC157] |
rs4545817 | HT | ALG1, FAM86A, [COL6A4P2] |
rs584630 | BD | ZNF33A, ZNF33B, ZNF37A, ZNF37B, [ZNF25] |
rs649483l | RA | FMN1 |
rs6510085 | RA | ZNF419, ZNF773, [ZNF772], [ZNF549] |
rs651263l | CAD | - |
rs731999l | BD, CAD, HT, T1D, T2D | CENPI |
rs8182488 | T1D | ZNF765, ZNF761, [ZNF813] |
rs9948005 | BD | FAM38B |
rs9976299 | RA | ITGB2 |
SNP_A-1817967 | CAD, CD | - |
SNP_A-1858955 | CD, BD | GUSBL1, GUSBL2, SMA4, GUSBP1, [RGL4] |