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Table 3 SNPs identified for various cohorts using the stringent filter (Part 2).

From: Evidence for somatic gene conversion and deletion in bipolar disorder, Crohn's disease, coronary artery disease, hypertension, rheumatoid arthritis, type-1 diabetes, and type-2 diabetes

Cohort(s) SNP/identity
(degeneracy)
Chr: Pos. (hg17)
and orientation
Duplicon
length
Characterized genes and
pseudogenes in duplicons
CD rs11060028 12: 128 M→ 1.5 kb GLT1D1
  93.4% (P) 10: 102 M← 1.2 kb [ABCC2]
T1D rs3805006 3: 4,775 K→ 402 ITPR1, [EGO]
  93.4% (P) 3: 4,773 K← 407 ITPR1, [EGO]
BD, HT rs9378249 6: 31.4 M→ 27 kb HLA-B, DHFRP2
  92.9% (F) 6: 31.3 M→ 35 kb HLA-C
HT rs841245 12: 27.1 M→ 84 kb -
  92.0% (P) 12: 27.6 M→ 82 kb PPFIBP1
BD rs12070036 1: 224 M→ 9 kb ZNF678
  91.9% 12: 7 M← 3.5 kb [PEX5]
  91.1% 12: 123 M← 10 kb [RILPL1], [TMED2]
  90.9% 11: 26 M← 2.7 kb -
RA rs4988327 11: 68 M→ 104 kb LRP5
  91.2% 22: 24 M← 64 kb LRP5L
T2D rs11010908 10: 37.2 M→ 6 kb -
  90.6% 10: 27.2 M← 12 kb -
  90.0% 10: 27.6 M→ 6 kb -
CAD rs295470 3: 141 M→ 1.9 kb ACTGP1, [RBP2]
  89.5% 17: 77 M← 2.3 kb ACTG1, [FSCN2]
  89.1% 1: 92 M← 866 -
  87.8% X: 53 M← 636 -
  86.6% 2: 108 M→ 568 -
  86.5% 17: 17 M→ 696 [FLCN]
  85.9% 3: 12 M→ 1.9 kb SYN2
BD, HT rs2122231 3: 35 M→ 4.9 kb -
  88.8% 6: 117.0 M→ 4 kb [NT5DC1]
  88.6% 18: 5 M→ 3.9 kb -
  88.5% 2: 194 M→ 1 kb -
  87.9% 1: 96 M→ 4.9 kb -
  87.3% 10: 117 M→ 4.2 kb -
  86.3% 20: 24 M→ 728 -
BD, HT SNP_A-1948953 17: 17 M→ 894 LNX1 pseudogene LOC644909
  87.0% (P) 4: 54 M← 21 kb LNX1
CD rs9839841 3: 16 M→ 110 kb RFTN1
  86.8% (F) Y: 7.6 M→ 100 kb RFTN1-pseudogene LOC360015, [TTTY12], [TTTY16]
BD, T2D rs4850057 2: 4 M→ 4.7 kb -
  86.8% 9: 35 M→ 4.5 kb UNC13B
  86.1% 11: 5 M→ 3.0 kb [TRIM68], [OR51D1], [OR51E1]
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