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Table 3 Summary of enrichment analysis for the top 1573 differentially expressed genes between groups II and III (p < 0.05)

From: Spatial transcriptome analysis reveals Notch pathway-associated prognostic markers in IDH1 wild-type glioblastoma involving the subventricular zone

MetaCoreTM process network

Upregulated in group II (n = 957)

Downregulated in group II (n = 616)

Term

p value (nupregulated/ntotal)

p value (ndownregulated/ntotal)

Blood vessel morphogenesis

0.058 (10/228)

2.14E-07 (20/228)

Muscle contraction

1.22E-03 (12/173)

0.411 (7/173)

Male sex differentiation

0.087 (10/246)

1.50E-03 (14/246)

Transmission of nerve impulse

2.36E-03 (13/212)

0.360 (6/212)

Neurogenesis

2.95E-03 (12/192)

0.452 (5/192)

Chemotaxis

0.669 (3/137)

4.13E-03 (9/137)

Anti-apoptosis via PI3K/Akt

0.982 (2/233)

7.16E-03 (12/233)

Leukocyte chemotaxis

0.891 (3/205)

7.36E-03 (11/205)

Neurohormone signaling

0.273 (7/211)

9.06E-03 (11/211)

Inflammation - IL-2 signaling

0.482 (3/104)

9.73E-03 (7/104)

  1. The top 10 enrichments according to p value are depicted (in bold: p < 0.01). In addition, the total number of genes per process network (ntotal) as well as the intersect with significantly up- or downregulated genes are displayed (nupregulated and ndownregulated)
  2. PI3K phosphatidylinositide 3-kinase, Akt protein kinase B