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Table 5 Differentially expressed genes of significant loci for DKD using Gene Expression Omnibus (GEO) dataset (GSE30529)

From: Identification of genetic variants associated with diabetic kidney disease in multiple Korean cohorts via a genome-wide association study mega-analysis

Gene symbol

log FC

AveExpr

P-value

B

TRIM27

−0.506

0.066

4.10×10−3

−0.556

HLA-A

−1.053

0.071

1.19×10−3

−0.904

CYP21A1P

0.162

0.013

0.261

−5.750

HLA-DQA1

−1.758

0.951

8.09×10−3

−2.783

HLA-DQA2

NA

NA

NA

NA

HLA-DQB1

−1.234

0.307

4.78×10−4

−0.132

HLA-DQB2

−0.450

0.170

2.21×10−2

−3.698

HLA-DRB1

NA

NA

NA

NA

HLA-DRB6

−0.725

0.018

3.53×10−5

2.347

XXbac-BPG154L12.4

NA

NA

NA

NA

  1. logFC estimate of the log2-fold-change corresponding to the effect or contrast, AveExpr average log2-expression for the probe over all arrays and channels, B log-odds that the gene is differentially expressed, NA not available