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Table 6 66 significant CpG-metabolite associations sorted by gene and significance

From: Integrated epigenome, whole genome sequence and metabolome analyses identify novel multi-omics pathways in type 2 diabetes: a Middle Eastern study

CpG

Gene

Metabolite

Pathway

Subpathway

Effect

P-value

cg19693031

TXNIP

1,5-anhydroglucitol (1,5-AG) a

Carbohydrate

Glycolysis, Gluconeogenesis, Pyruvate

0.02

2.93E-19

cg19693031

TXNIP

pyruvate

Carbohydrate

Glycolysis, Gluconeogenesis, Pyruvate

-0.02

4.94E-14

cg19693031

TXNIP

Glucosea

Carbohydrate

Glycolysis, Gluconeogenesis, Pyruvate

-0.01

2.09E-11

cg02988288

TXNIP;NBPF20;NBPF10

glucose

Carbohydrate

Glycolysis, Gluconeogenesis, Pyruvate

-0.01

9.24E-07

cg19693031

TXNIP

3-methyl-2-oxobutyrate

Amino Acid

Leucine, Isoleucine, Valine

-0.02

2.14E-13

cg19693031

TXNIP

3-methyl-2-oxovalerate

Amino Acid

Leucine, Isoleucine, Valine

-0.01

1.23E-06

cg19693031

TXNIP

1-carboxyethylvaline

Amino Acid

Leucine, Isoleucine, Valine

-0.01

9.64E-06

cg19693031

TXNIP

mannonate*

Xenobiotics

Food Component/Plant

-0.01

1.61E-11

cg19693031

TXNIP

Gluconatea

Xenobiotics

Food Component/Plant

-0.01

4.83E-08

cg02988288

TXNIP;NBPF20;NBPF10

mannonate*

Xenobiotics

Food Component/Plant

-0.01

9.01E-06

cg19693031

TXNIP

1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*

Lipid

Phosphatidylethanolamine (PE)

-0.01

4.31E-11

cg19693031

TXNIP

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

-0.01

4.03E-09

cg19693031

TXNIP

alanine

Amino Acid

Alanine, Aspartate

-0.01

9.68E-10

cg02988288

TXNIP;NBPF20;NBPF10

alanine

Amino Acid

Alanine, Aspartate

-0.01

3.02E-08

cg19693031

TXNIP

erythronate*

Carbohydrate

Aminosugar

-0.01

2.57E-08

cg19693031

TXNIP

Mannosea

Carbohydrate

Fructose, Mannose, Galactose

-0.01

9.30E-07

cg19693031

TXNIP

glutamine

Amino Acid

Glutamate

0.01

1.11E-06

cg19693031

TXNIP

2-hydroxybutyrate/2-hydroxyisobutyratea

Amino Acid

Glutathione

-0.01

1.66E-10

cg19693031

TXNIP

ribitol

Carbohydrate

Pentose

-0.01

5.98E-06

cg19693031

TXNIP

1-carboxyethylphenylalanine

Amino Acid

Phenylalanine

-0.01

1.63E-06

cg19693031

TXNIP

X—24295

Unnamed

Unnamed

-0.01

7.53E-15

cg19693031

TXNIP

X—24334

Unnamed

Unnamed

-0.02

3.62E-12

cg19693031

TXNIP

X—12101

Unnamed

Unnamed

-0.01

4.17E-09

cg19693031

TXNIP

X—14056

Unnamed

Unnamed

-0.01

3.03E-08

cg19693031

TXNIP

X—19438

Unnamed

Unnamed

-0.01

1.32E-07

cg11969813

P4HB

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

1.23E-08

cg00683922

PFKFB2

1-carboxyethylphenylalanine

Amino Acid

Phenylalanine

0.01

3.57E-08

cg22699725

PFKFB2

alanine

Amino Acid

Alanine, Aspartate

0.01

3.31E-07

cg00683922

PFKFB2

alanine

Amino Acid

Alanine, Aspartate

0.01

4.54E-07

cg00683922

PFKFB2

erythronate*

Carbohydrate

Aminosugar

0.01

2.87E-06

cg00683922

PFKFB2

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

7.71E-07

cg00683922

PFKFB2

X—14,056

Unnamed

Unnamed

0.01

1.00E-05

cg06291107

BLCAP

mannonate*

Xenobiotics

Food Component/Plant

0.01

3.08E-07

cg06291107

BLCAP

glucose

Carbohydrate

Glycolysis, Gluconeogenesis, Pyruvate

0.01

5.76E-07

cg06291107

BLCAP

ribitol

Carbohydrate

Pentose

0.01

6.12E-07

cg06291107

BLCAP

1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*

Lipid

Phosphatidylethanolamine (PE)

0.01

2.21E-07

cg06291107

BLCAP

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

8.49E-07

cg01676795

POR

1,5-anhydroglucitol (1,5-AG)

Carbohydrate

Glycolysis, Gluconeogenesis, Pyruvate

-0.01

2.25E-07

cg01676795

POR

glycosyl ceramide (d18:2/24:1, d18:1/24:2)*

Lipid

Hexosylceramides (HCER)

-0.01

8.92E-06

cg01676795

POR

methylsuccinoylcarnitine

Amino Acid

Leucine, Isoleucine, Valine

0.01

3.89E-06

cg00092123

KIAA1211L

mannonate*

Xenobiotics

Food Component/Plant

0.01

4.37E-07

cg09029192

TNRC6C

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

7.23E-07

cg09029192

TNRC6C

1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*

Lipid

Phosphatidylethanolamine (PE)

0.01

2.36E-06

cg13547913

OCIAD1

1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*

Lipid

Phosphatidylethanolamine (PE)

0.01

8.90E-07

cg13547913

OCIAD1

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

1.51E-06

cg18939666

PEF1

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

9.27E-07

cg18939666

PEF1

1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*

Lipid

Phosphatidylethanolamine (PE)

0.01

3.02E-06

cg18939666

PEF1

mannonate*

Xenobiotics

Food Component/Plant

0.01

8.02E-06

cg10167677

THBS4

mannonate*

Xenobiotics

Food Component/Plant

0.01

1.06E-06

cg10167677

THBS4

methylsuccinoylcarnitine

Amino Acid

Leucine, Isoleucine, Valine

0.01

3.62E-06

cg12350057

PPP1R3E

erythronate*

Carbohydrate

Aminosugar

0.01

1.14E-06

cg00994936

DAZAP1

mannonate*

Xenobiotics

Food Component/Plant

0.01

1.72E-06

cg04326337

RPRD1B

ribitol

Carbohydrate

Pentose

0.01

1.73E-06

cg06721411

DQX1

ribitol

Carbohydrate

Pentose

0.01

2.10E-06

cg06721411

DQX1

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

4.59E-06

cg06721411

DQX1

1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*

Lipid

Phosphatidylethanolamine (PE)

0.01

7.90E-06

cg27305772

MUS81

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

2.32E-06

cg09879165

CACNA2D2

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.00

3.24E-06

cg15007470

TCF3

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

6.22E-06

cg19707375

BAIAP2-AS1

glycosyl ceramide (d18:2/24:1, d18:1/24:2)*

Lipid

Hexosylceramides (HCER)

-0.01

9.55E-06

cg08088075

 

1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*

Lipid

Phosphatidylethanolamine (PE)

0.01

1.73E-07

cg09777883

 

ribitol

Carbohydrate

Pentose

0.01

2.19E-07

cg08088075

 

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

2.54E-07

cg09777883

 

1-palmitoyl-2-oleoyl-GPE (16:0/18:1)

Lipid

Phosphatidylethanolamine (PE)

0.01

1.20E-06

cg09777883

 

1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*

Lipid

Phosphatidylethanolamine (PE)

0.01

2.70E-06

cg22896572

 

ribitol

Carbohydrate

Pentose

0.01

5.38E-06

  1. a indicates associations previously reported in other studies. *indicates compounds that have not been officially confirmed based on a standard, but Metabolon is confident in its identity